COVID-19 NPIS
Indices and tables
Overview
Getting started
Reference
Model
Main model
Disease spread
Reproduction number
Number of tests
Deaths
Utility
Plot
Data converter
Distribution
Time series
Data & ModelParams
Data
ModelParams
For developpers
Contributing
Debugging
How to build a dataset for our model
COVID-19 NPIS
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_add_mpl_rect_around_text() (in module covid19_npis.plot.distributions)
_calc_Phi_IFR() (in module covid19_npis.model.deaths)
_calc_positive_tests() (in module covid19_npis.model.number_of_tests)
_calc_reporting_delay_kernel() (in module covid19_npis.model.number_of_tests)
_calc_total_number_of_tests_performed() (in module covid19_npis.model.number_of_tests)
_calculate_Bsplines() (in module covid19_npis.model.number_of_tests)
_construct_phi_age() (in module covid19_npis.model.number_of_tests)
_construct_phi_tests_reported() (in module covid19_npis.model.number_of_tests)
_construct_reporting_delay() (in module covid19_npis.model.deaths)
(in module covid19_npis.model.number_of_tests)
_create_distributions() (in module covid19_npis.model.reproduction_number)
_distribution() (in module covid19_npis.plot.distributions)
_fsigmoid() (in module covid19_npis.model.reproduction_number)
_get_mpl_text_coordinates() (in module covid19_npis.plot.distributions)
_make_global() (covid19_npis.ModelParams method)
_plot_posterior() (in module covid19_npis.plot.distributions)
_plot_prior() (in module covid19_npis.plot.distributions)
_timeseries() (in module covid19_npis.plot.time_series)
_update_data_summary() (covid19_npis.ModelParams method)
A
add_intervention() (covid19_npis.data.Country class method)
C
calc_delayed_deaths() (in module covid19_npis.model.deaths)
Change_point (class in covid19_npis.data)
concatenate_axes() (in module covid19_npis.model.utils)
construct_Bsplines_basis() (in module covid19_npis.model.number_of_tests)
construct_delay_kernel() (in module covid19_npis.model.disease_spread)
construct_E_0_t() (in module covid19_npis.model.disease_spread)
construct_generation_interval() (in module covid19_npis.model.disease_spread)
construct_lambda_0() (in module covid19_npis.model.reproduction_number)
construct_R_0() (in module covid19_npis.model.reproduction_number)
construct_R_0_old() (in module covid19_npis.model.reproduction_number)
construct_R_t() (in module covid19_npis.model.reproduction_number)
construct_testing_state() (in module covid19_npis.model.number_of_tests)
convert_trace_to_dataframe() (in module covid19_npis.data)
convert_trace_to_dataframe_list() (in module covid19_npis.data)
convolution_with_fixed_kernel() (in module covid19_npis.model.utils)
convolution_with_map() (in module covid19_npis.model.utils)
convolution_with_varying_kernel() (in module covid19_npis.model.utils)
countries() (covid19_npis.ModelParams property)
Country (class in covid19_npis.data)
country_by_name() (covid19_npis.ModelParams method)
covid19_npis.model.deaths (module)
covid19_npis.model.number_of_tests (module)
covid19_npis.model.reproduction_number (module)
covid19_npis.model.utils (module)
covid19_npis.plot.distributions (module)
covid19_npis.plot.time_series (module)
create_change_points() (covid19_npis.data.Country method)
D
data_summary() (covid19_npis.ModelParams property)
date_data_tensor() (covid19_npis.ModelParams property)
deaths_data_tensor() (covid19_npis.ModelParams property)
deaths_dataframe() (covid19_npis.ModelParams property)
distribution() (in module covid19_npis.plot.distributions)
distribution_matrix() (in module covid19_npis.plot.distributions)
E
einsum_indexed() (in module covid19_npis.model.utils)
F
from_folder() (covid19_npis.ModelParams class method)
G
gamma() (in module covid19_npis.model.utils)
gamma_data_tensor() (covid19_npis.ModelParams property)
generate_testing() (in module covid19_npis.model.number_of_tests)
get_filter_axis_data_from_dims() (in module covid19_npis.model.utils)
get_intervention_by_name() (covid19_npis.data.Country class method)
I
indices_begin_data() (covid19_npis.ModelParams property)
InfectionModel() (in module covid19_npis.model.disease_spread)
Intervention (class in covid19_npis.data)
L
length_data() (covid19_npis.ModelParams property)
length_sim() (covid19_npis.ModelParams property)
M
main_model() (in module covid19_npis.model)
match_axes() (in module covid19_npis.model.utils)
ModelParams (class in covid19_npis)
N
N_data_tensor() (covid19_npis.ModelParams property)
N_data_tensor_total() (covid19_npis.ModelParams property)
N_dataframe() (covid19_npis.ModelParams property)
P
pos_tests_data_tensor() (covid19_npis.ModelParams property)
pos_tests_dataframe() (covid19_npis.ModelParams property)
pos_tests_total_data_tensor() (covid19_npis.ModelParams property)
positive_axes() (in module covid19_npis.model.utils)
S
set_intervention_alpha_prior() (covid19_npis.data.Country class method)
slice_of_axis() (in module covid19_npis.model.utils)
spline_basis() (covid19_npis.ModelParams property)
T
timeseries() (in module covid19_npis.plot.time_series)
total_tests_data_tensor() (covid19_npis.ModelParams property)
total_tests_dataframe() (covid19_npis.ModelParams property)
W
weekly_modulation() (in module covid19_npis.model.number_of_tests)
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